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DEVELOPMENT OF REAL-TIME MULTIPLEX PCR FOR THE QUANTITATIVE DETERMINATION OF TREC'S AND KREC'S IN WHOLE BLOOD AND IN DRIED BLOOD SPOTS

https://doi.org/10.15789/1563-0625-2015-5-467-478

Abstract

Primary immunodeficiencies (PID) such as severe combined immunodeficiency (SCID) and X-linked agammaglobulinemia are characterized by the lack of functional Tand B-cells, respectively. Without early diagnosis and prompt treatment children with PID suffer from severe infectious diseases, leading to their death or disability. Our purpose was developing of simple, inexpensive, high throughput technique based on the quantitative determination of TREC and KREC molecules by real-time PCR, and its validation in a group of children with a verified diagnosis of SCID and X-linked agammaglobulinemia.

In this study, we developed and validated multiplex real-time PCR for the TREC’s and KREC’s quantitative analysis. We have shown that linear range of Ct changes depending on the concentrations of targets with a correlation coefficient R2 not worse than 0.98 was observed at concentrations from 109 to 5 × 104 copies per ml. The lowest amount of targets reliably detected in a reaction volume was 10 TREC’s copies, 5 KREC ‘s copies and 5 copies of internal control (IL17RA). We determined the age-depended reference values of TRECs and KRECs in whole blood in 29 boys and 27 girls with normal immunological parameters. The normal cut-offs for TRECs and KRECs were defined in dry blood spots depending on the method of extraction.

The proposed method showed 100% diagnostic sensitivity and specificity in the studied group. The method can be proposed as a screening tool for the diagnosis of SCID and X-linked agammaglobulinemia both in whole blood and in the dry blood spots. The further investigation is required with larger number of samples. 

About the Authors

M. A. Gordukova
G.N. Speranskiy Children Hospital No 9, Moscow
Russian Federation

Biologist, Clinical Diagnostic Laboratory.

Address for korrespondence: Gordukova Maria A. G.N.Speranskiy Children Hospital No 9 123317, Russian Federation, Moscow, Shmitovsky str., 29. Phone: 7 (499) 256-21-62. Fax: 7 (499) 256-61-27. E-mail: ma.gordukova@dgkb-9.ru



I. P. Oskorbin
Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Novosibirsk; Novosibirsk State University
Russian Federation
Graduate Student, Department of Molecular Biology, Novosibirsk State University


O. V. Mishukova
Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Novosibirsk
Russian Federation
Junior Research Associate, Pharmacogenomics Laboratory


S. B. Zimin
G.N. Speranskiy Children Hospital No 9, Moscow
Russian Federation
Head, Department of Immunopathology


N. V. Zinovieva
G.N. Speranskiy Children Hospital No 9, Moscow
Russian Federation
PhD (Medicine), Head, Allergy and Immunology Department


N. V. Davydova
G.N. Speranskiy Children Hospital No 9, Moscow
Russian Federation
PhD (Medicine), Doctor, Clinical Diagnostic Laboratory


A. S. Smirnova
G.N. Speranskiy Children Hospital No 9, Moscow
Russian Federation
Doctor, Clinical Diagnostic Laboratory


I. A. Nikitina
G.N. Speranskiy Children Hospital No 9, Moscow
Russian Federation
Head, Training Laboratory of Faculty of Pediatrics № 2 of Pirogov Russian National Research Medical University


I. A. Korsunsky
G.N. Speranskiy Children Hospital No 9, Moscow
Russian Federation
PhD (Medicine), Head, Moscow City Center for Pediatric Immunology and Allergy


M. L. Filipenko
Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Novosibirsk; Novosibirsk State University
Russian Federation
PhD (Biology), Head, Pharmacogenomics Laboratory, nstitute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences; Head, Paleogenetics Laboratory, Novosibirsk State University


A. P. Prodeus
G.N. Speranskiy Children Hospital No 9, Moscow
Russian Federation
PhD, MD (Medicine), Professor, Deputy Chief of Infectious Diseases


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Review

For citations:


Gordukova M.A., Oskorbin I.P., Mishukova O.V., Zimin S.B., Zinovieva N.V., Davydova N.V., Smirnova A.S., Nikitina I.A., Korsunsky I.A., Filipenko M.L., Prodeus A.P. DEVELOPMENT OF REAL-TIME MULTIPLEX PCR FOR THE QUANTITATIVE DETERMINATION OF TREC'S AND KREC'S IN WHOLE BLOOD AND IN DRIED BLOOD SPOTS. Medical Immunology (Russia). 2015;17(5):467-478. (In Russ.) https://doi.org/10.15789/1563-0625-2015-5-467-478

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ISSN 1563-0625 (Print)
ISSN 2313-741X (Online)