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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">mimmun</journal-id><journal-title-group><journal-title xml:lang="ru">Медицинская иммунология</journal-title><trans-title-group xml:lang="en"><trans-title>Medical Immunology (Russia)</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">1563-0625</issn><issn pub-type="epub">2313-741X</issn><publisher><publisher-name>SPb RAACI</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.15789/1563-0625-ABA-2577</article-id><article-id custom-type="elpub" pub-id-type="custom">mimmun-2577</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ОРИГИНАЛЬНЫЕ СТАТЬИ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>ORIGINAL ARTICLES</subject></subj-group></article-categories><title-group><article-title>Применение биоинформатического анализа для прогностической оценки клинической значимости миссенс-мутаций гена HS3ST6 в развитии наследственного ангиоотека</article-title><trans-title-group xml:lang="en"><trans-title>Applying bioinformatic analysis for prognostic assessment of the HS3ST6 missense mutations clinical significance in the development of hereditary angioedema</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-3485-8545</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Печникова</surname><given-names>Н. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Pechnikova</surname><given-names>N. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Младший научный сотрудник лаборатории иммунологии и вирусологии ВИЧ-инфекции.</p><p>197101, Санкт-Петербург, ул. Мира, 14</p></bio><bio xml:lang="en"><p>Junior Research Associate, Laboratory of Immunology and Virology HIV, Saint Petersburg Pasteur Institute.</p><p>14 Mira St St. Petersburg 197101</p></bio><email xlink:type="simple">nikanobelevka@gmail.com</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-2270-8897</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Останкова</surname><given-names>Ю. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Ostankova</surname><given-names>Yu. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Останкова Юлия Владимировна – кандидат биологических наук, заведующая лабораторией иммунологии и вирусологии ВИЧ-инфекции, старший научный сотрудник лаборатории молекулярной иммунологии.</p><p>197101, Санкт-Петербург, ул. Мира, 14</p><p>Тел.: 8 (812) 233-20-92</p></bio><bio xml:lang="en"><p>Yulia V. Ostankova - PhD (Biology), Head, Laboratory of Immunology and Virology HIV, Senior Research Associate, Laboratory of Molecular Immunology, Saint Petersburg Pasteur Institute.</p><p>14 Mira St St. Petersburg 197101</p><p>Phone: +7 (812) 233-20-92</p></bio><email xlink:type="simple">shenna1@yandex.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-7603-3269</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Сайтгалина</surname><given-names>М. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Saitgalina</surname><given-names>M. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Младший научный сотрудник лаборатории молекулярной иммунологии.</p><p>197101, Санкт-Петербург, ул. Мира, 14</p></bio><bio xml:lang="en"><p>Junior Junior Research Associate, Laboratory of Molecular Immunology, Saint Petersburg Pasteur Institute.</p><p>14 Mira St St. Petersburg 197101</p></bio><email xlink:type="simple">sajgalinam@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Бебяков</surname><given-names>А. М.</given-names></name><name name-style="western" xml:lang="en"><surname>Bebyakov</surname><given-names>A. M.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Лаборант-исследователь лаборатории иммунологии и вирусологии ВИЧ-инфекции.</p><p>197101, Санкт-Петербург, ул. Мира, 14</p></bio><bio xml:lang="en"><p>Laboratory Assistant, Laboratory of Immunology and Virology HIV, Saint Petersburg Pasteur Institute.</p><p>14 Mira St St. Petersburg 197101</p></bio><email xlink:type="simple">shenna1@yandex.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-0917-6048</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Денисова</surname><given-names>А. Р.</given-names></name><name name-style="western" xml:lang="en"><surname>Denisova</surname><given-names>A. R.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Кандидат медицинских наук, ассистент кафедры детских болезней, Клинический институт детского здоровья имени Н.Ф. Филатова ПМГМУ им. И.М. Сеченова МЗ РФ (Сеченовский университет); ведущий научный сотрудник Научно-исследовательского института педиатрии и охраны здоровья детей Научно-клинического центра № 2 РНЦ хирургии им. ак. Б.В. Петровского.</p><p>Москва</p></bio><bio xml:lang="en"><p>PhD (Medicine), Assistant Professor, Department of Children’s Diseases, N. Filatov Clinical Institute of Children’s Health, I. Sechenov First Moscow State Medical University (Sechenov University); Leading Research Associate, Research Institute of Pediatrics and Children’s Health, Scientific and Clinical Center No. 2, B. Petrovsky Russian Scientific Center of Surgery.</p><p>Moscow</p></bio><email xlink:type="simple">Anita_D@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-7498-1636</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Подчерняева</surname><given-names>Н. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Podchernyaeva</surname><given-names>N. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Доктор медицинских наук, профессор кафедры детских болезней, Клинический институт детского здоровья имени Н.Ф. Филатова.</p><p>Москва</p></bio><bio xml:lang="en"><p>PhD, MD (Medicine), Professor, Department of Children’s Diseases, N. Filatov Clinical Institute of Children’s Health, I. Sechenov First Moscow State Medical University (Sechenov University).</p><p>Moscow</p></bio><email xlink:type="simple">n-cherny2011@mail.ru</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-4571-8799</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Тотолян</surname><given-names>А. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Totolian</surname><given-names>A. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Арег А. Тотолян – Доктор медицинских наук, профессор, академик РАН, заведующий лабораторией молекулярной иммунологии, директор Санкт-Петербургского НИИ эпидемиологии и микробиологии им. Пастера; заведующий кафедрой иммунологии ПСПбГМУ МЗ РФ.</p><p>Санкт-Петербург</p></bio><bio xml:lang="en"><p>Areg A. Totolian - PhD, MD (Medicine), Professor, Full Member, Russian Academy of Sciences, Head, Laboratory of Molecular Immunology, Director, Saint Petersburg Pasteur Institute; Head, Department of Immunology, First St. Petersburg State I. Pavlov Medical University.</p><p>St. Petersburg</p></bio><email xlink:type="simple">totolian@pasteurorg.ru</email><xref ref-type="aff" rid="aff-4"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Санкт-Петербургский научно-исследовательский институт эпидемиологии и микробиологии имени Пастера</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Saint Petersburg Pasteur Institute</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Первый Московский государственный медицинский университет имени И.М. Сеченова Министерства здравоохранения РФ (Сеченовский университет); Российский научный центр хирургии имени академика Б.В. Петровского</institution><country>Россия</country></aff><aff xml:lang="en"><institution>I. Sechenov First Moscow State Medical University (Sechenov University); B. Petrovsky Russian Scientific Center of Surgery</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru"><institution>Первый Московский государственный медицинский университет имени И.М. Сеченова Министерства здравоохранения РФ (Сеченовский университет)</institution><country>Россия</country></aff><aff xml:lang="en"><institution>I. Sechenov First Moscow State Medical University (Sechenov University)</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-4"><aff xml:lang="ru"><institution>Санкт-Петербургский научно-исследовательский институт эпидемиологии и микробиологии имени Пастера; Первый Санкт-Петербургский государственный медицинский университет имени академика И.П. Павлова Министерства здравоохранения РФ</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Saint Petersburg Pasteur Institute; First St. Petersburg State I. Pavlov Medical University</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2023</year></pub-date><pub-date pub-type="epub"><day>18</day><month>11</month><year>2022</year></pub-date><volume>25</volume><issue>1</issue><fpage>135</fpage><lpage>154</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Печникова Н.А., Останкова Ю.В., Сайтгалина М.А., Бебяков А.М., Денисова А.Р., Подчерняева Н.С., Тотолян А.А., 2023</copyright-statement><copyright-year>2023</copyright-year><copyright-holder xml:lang="ru">Печникова Н.А., Останкова Ю.В., Сайтгалина М.А., Бебяков А.М., Денисова А.Р., Подчерняева Н.С., Тотолян А.А.</copyright-holder><copyright-holder xml:lang="en">Pechnikova N.A., Ostankova Y.V., Saitgalina M.A., Bebyakov A.M., Denisova A.R., Podchernyaeva N.S., Totolian A.A.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.mimmun.ru/mimmun/article/view/2577">https://www.mimmun.ru/mimmun/article/view/2577</self-uri><abstract><p>Наследственный ангиоотек (НАО) – генетически детерминированное заболевание, характеризующееся повторяющимися отеками, поражающими подкожные и/или подслизистые слои ткани, лицо, губы, шею, конечности, ротовую полость, кишечник и/или гортань. В последнем случае заболевание становится опасным для жизни. Преимущественно НАО связан со снижением уровней С1 (ингибитор С1-эстеразы), описаны НАО с дисфункциональным и с нормальным С1-ингибитором. При первом и втором вариантах причиной заболевания становятся мутации в гене C1NH. НАО с нормальным количественным и функциональным уровнями С1-ингибитора имеет те же клинические проявления, но с мутациями в иных генах, в том числе F12, PLG, ANGPT1, KNG1, MYOF, HS3ST6. В настоящее время мутации в гене HS3ST6 остаются малоизученными, описана только одна миссенсмутация (p.Thr144Ser, rs746467957), связанная с развитием НАО.</p><p>Целью нашей работы являлось изучение новых мутаций в гене HS3ST6 и прогностический анализ in silico их характера и клинической значимости для развития НАО.</p><p>Материалом служили образцы цельной крови, полученные от 13 пациентов с симптомами НАО без снижения уровней и функции C1-INH.</p><p>Методы исследования включали секвенирование полного экзома пациентов, биоинформатический анализ мутаций гена HS3ST6 с использованием ряда баз данных и веб-ресурсов для прогноза влияния мутаций на белок и оценки консервативности позиций обнаруженных мутаций.</p><p>Мутации в гене HS3ST6 выявлены у четырех больных, в том числе два случая с двумя мутациями одновременно. Применение биоинформатического анализа позволило получить новые данные о четырех миссенс-мутациях в исследуемом гене. Для трех из них определена потенциальная патогенетическая значимость. Для мутации NC_000016.9:g.1962132G&gt;A (р.A163V) наиболее вероятным путем участия в патогенезе НАО является косвенное нарушение O-сульфирования гепарансульфата непосредственно внутри белка. Мутация NC_000016.9:g.1962024G&gt;A (р.P199L), по всей видимости, приводит к развитию заболевания за счет нарушения соединения с гепарансульфатом SDC2. При мутации NC_000016.9:g.1962046C&gt;T (р.A192T) дестабилизация 192 аминокислотной позиции рядом с PAPS может способствовать срыву O-сульфирования гепарансульфата за счет нарушения функциональной активности белка и, соответственно, катализа переноса сульфогруппы на гепарансульфат синдекана-2. Во всех трех случаях представляется возможным формирование НАО в связи с нарушением этапов O-сульфирования гепарансульфата синдекана-2.</p><p>Учитывая, что методы in silico открывают новые возможности оценки патогенетической значимости мутаций, применение биоинформатического анализа может способствовать детальному исследованию истоков НАО. В настоящей работе убедительно показано, что редкие мутации в гене HS3ST6, могут быть задействованы в патогенезе НАО и провоцировать отеки за счет повышенного релиза брадикинина.</p></abstract><trans-abstract xml:lang="en"><p>Hereditary angioedema (HAE) is a genetically determined disease characterized by recurrent attacks of edema affecting the subcutaneous and/or submucosal layers of tissue, face, lips, neck, extremities of the body,  oral cavity,  intestine and/or larynx. In the latter case, the disease becomes life-threatening.    The majority of HAE cases are associated with decreased levels of C1 (C1-esterase inhibitor), there are also descriptions of HAE with dysfunctional C1 inhibitor and HAE with normal C1 inhibitor. In the first and second variants, mutations in the C1NH gene are the cause of the disease. HAE with normal quantitative  and functional levels of C1-inhibitor has the same clinical manifestations but with mutations in other genes, including F12, PLG, ANGPT1, KNG1, MYOF, and HS3ST6. Currently, mutations in the HS3ST6 gene remain poorly understood; only one missense mutation (p.Thr144Ser, rs746467957) associated with the development of HAE has been described.</p><p>The aim of our work was to study new mutations in the HS3ST6 gene and analyze in silico their prognostic nature and clinical significance for the development of hereditary angioedema.</p><p>The material was whole blood samples obtained from 13 patients with symptoms of hereditary angioedema without reduced levels and function of C1-INH.</p><p>Whole exome sequencing of patients, bioinformatic analysis of HS3ST6 gene mutations using a number of databases and Web resources to predict the effect of mutations on the protein and assess the conservatism of the positions of the mutations detected was involved in study methods.</p><p>Mutations in the HS3ST6 gene were identified in four patients, including two cases with two mutations simultaneously. Application of bioinformatic analysis allowed us to obtain new data on four missense mutations in the studied gene. Potential pathogenetic significance was determined for three of them. The mutation NC_000016.9:g.1962132G&gt;A (p.A163V) is most likely to be involved in pathogenesis of HAE by indirect disruption of heparan sulfate O-sulfation directly within the protein. The NC_000016.9:g.1962024G&gt;A mutation (p.P199L) appears to lead to the development of the disease through disruption of docking with SDC2 heparan sulfate. In the NC_000016.9:g.1962046C&gt;T (p.A192T) mutation, destabilization of the 192 amino acid position next to PAPS, may contribute to disruption of heparan sulfate O-sulfation through disruption of protein functional activity and, therefore, catalysis transfer of sulfo group to heparan sulfate syndecan-2. Thus, in all three cases, the formation of HAE appears to be possible due to disruption of the O-sulfation steps of heparan sulfate syndecan-2.</p><p>Considering that in silico methods offer new opportunities to assess the pathogenetic significance of mutations, the application of bioinformatic analysis can contribute to a detailed investigation of the causes of hereditary angioedema. The present work convincingly demonstrates that rare mutations in the HS3ST6 gene may be involved in the pathogenesis of HAE and provoke edema due to increased bradykinin release.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>первичные иммунодефициты</kwd><kwd>наследственный ангиоотек</kwd><kwd>ген HS3ST6</kwd><kwd>патогенетически значимые мутации</kwd><kwd>полиморфизм</kwd><kwd>биоинформатические технологии</kwd><kwd>анализ in silico</kwd></kwd-group><kwd-group xml:lang="en"><kwd>primary immunodeficiencies</kwd><kwd>hereditary angioedema</kwd><kwd>HS3ST6 gene</kwd><kwd>pathogenetically significant mutations</kwd><kwd>polymorphism</kwd><kwd>bioinformatic technologies</kwd><kwd>in silico analysis</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Близнец Е.А., Ряднинская Н.В., Галеева Н.М., Кузнецова И.А., Дмитриева А.В., Латышева Т.В., Латышева Е.А., Гусева М.Н., Поляков А.В. 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